Pumpkin Cream Cheese Muffins have quickly become one of my favorite fall treats to bake and enjoy. After trying countless pumpkin recipes, this one truly stands out—not just because it’s easy to make, but because the flavors and textures come together so beautifully. The moist, spiced pumpkin muffin paired with a creamy, tangy cream cheese filling is absolutely irresistible. Every bite feels like a cozy hug on a chilly morning.

I remember the first time I baked these Pumpkin Cream Cheese Muffins; the house filled with the warm scent of cinnamon and pumpkin spice, and I couldn’t wait to taste them fresh out of the oven. The crumb topping added a delightful crunch that perfectly balanced the soft, tender muffin beneath.
Since then, these Pumpkin Cream Cheese Muffins have become a staple in my kitchen, whether for breakfast, a snack, or even a simple dessert.
Why Pumpkin Cream Cheese Muffins is the Ideal Recipe
If you’re anything like me, you want a recipe that’s not only delicious but also easy enough to whip up without stress. That’s exactly why these Pumpkin Cream Cheese Muffins have become my go-to. They strike the perfect balance between cozy fall flavors and simple, fuss-free baking.
What I love most about this Pumpkin Cream Cheese Muffins is how it brings together the best of both worlds—the tender, spiced pumpkin muffin and the creamy, slightly tangy cream cheese filling. It’s like having a little slice of pumpkin cheesecake wrapped inside a muffin. Plus, the crumb topping adds that extra bit of crunch and sweetness that makes every bite feel special.
Another reason this Pumpkin Cream Cheese Muffins is ideal? It’s incredibly forgiving. Even if you’re new to baking, the step-by-step instructions make it easy to follow, and the ingredients are straightforward and easy to find. I’ve made these Pumpkin Cream Cheese Muffins for busy mornings, last-minute guests, and even holiday gatherings, and they always get rave reviews.
So, if you’re looking for a pumpkin recipe that’s comforting, crowd-pleasing, and simple to make, these Pumpkin Cream Cheese Muffins are exactly what you need.
Key Ingredients in Pumpkin Cream Cheese Muffins
Crumb Topping
- 1/3 cup (67g) packed light or dark brown sugar
- 1 teaspoon ground cinnamon
- 1/4 cup (4 Tbsp; 56g) unsalted butter, melted
- 2/3 cup (84g) all-purpose flour
Pumpkin Muffins
- 1 and 3/4 cups (219g) all-purpose flour (spooned & leveled)
- 1 teaspoon baking powder
- 1 teaspoon baking soda
- 1/2 teaspoon salt
- 2 teaspoons ground cinnamon
- 1 teaspoon store-bought or homemade pumpkin pie spice*
- 1/2 cup (100g) packed light or dark brown sugar
- 1/2 cup (100g) granulated sugar
- 2 large eggs, at room temperature
- 1 cup (227g) canned pumpkin puree
- 1/2 cup (120ml) vegetable oil (or melted coconut oil)
- 1/3 cup (80ml) milk
- 1 teaspoon pure vanilla extract
Cream Cheese Filling
- 6 ounces (170g) full-fat brick cream cheese, softened to room temperature
- 1 egg yolk, at room temperature
- 1/2 teaspoon pure vanilla extract
- 3 Tablespoons (36g) granulated sugar
Pumpkin Cream Cheese Muffins – A Perfect Fall Treat
- Total Time: 35-37 min
- Yield: 12-14 muffins
Description
Pumpkin Cream Cheese Muffins are soft, moist muffins bursting with warm pumpkin spice flavor, filled with a rich, creamy vanilla-sweetened cream cheese center, and topped with a crunchy cinnamon brown sugar crumb. Made with pumpkin puree, cream cheese, flour, spices, and brown sugar.
Ingredients
Crumb Topping
1/3 cup (67g) packed light or dark brown sugar
1 teaspoon ground cinnamon
1/4 cup (4 Tbsp; 56g) unsalted butter, melted
2/3 cup (84g) all-purpose flour
Pumpkin Muffins
1 and 3/4 cups (219g) all-purpose flour (spooned & leveled)
1 teaspoon baking powder
1 teaspoon baking soda
1/2 teaspoon salt
2 teaspoons ground cinnamon
1 teaspoon store-bought or homemade pumpkin pie spice*
1/2 cup (100g) packed light or dark brown sugar
1/2 cup (100g) granulated sugar
2 large eggs, at room temperature
1 cup (227g) canned pumpkin puree
1/2 cup (120ml) vegetable oil (or melted coconut oil)
1/3 cup (80ml) milk
1 teaspoon pure vanilla extract
Cream Cheese Filling
6 ounces (170g) full-fat brick cream cheese, softened to room temperature
1 egg yolk, at room temperature
1/2 teaspoon pure vanilla extract
3 Tablespoons (36g) granulated sugar
Instructions
Preheat oven to 425°F (218°C). Spray a 12-count muffin pan with nonstick spray or line with cupcake liners. This recipe makes 12-14 muffins, so you may need a 2nd muffin pan or bake this recipe in batches.
Make the crumb-topping first: Mix the brown sugar, cinnamon, and melted butter together in a small bowl until combined. Add the flour and use a fork to gently mix until crumbs form. Don’t over-mix into a paste. Just mix until it is crumbly. Set aside.
Make the pumpkin batter: Whisk the flour, baking powder, baking soda, salt, cinnamon and pumpkin pie spice together in a large bowl. Set aside. In a medium bowl, whisk the brown sugar, granulated sugar, eggs, pumpkin, oil, milk, and vanilla extract together. Pour the wet ingredients into the dry ingredients and whisk or stir until just combined. Avoid over-mixing.
Make the cheesecake filling: Using a handheld or stand mixer fitted with a paddle or whisk attachment, beat the cream cheese in a medium bowl on medium-high speed until smooth and creamy. Beat in the egg yolk, vanilla extract, and sugar until combined.
Spoon 1 heaping Tablespoon of pumpkin muffin batter into the muffin cups. Layer with about 1 spoonful (not quite a full Tablespoon) of cheesecake filling, then another heaping Tablespoon of muffin batter—or however much batter is needed to fill the cups all the way to the top. Some cheesecake filling may poke out of the top or on the sides. Sprinkle crumb topping onto each, then press it down into the tops of the muffins to help prevent it from falling off as the muffins bake.
Bake for 5 minutes 425°F (218°C) then, keeping the muffins in the oven, reduce heat to 350°F (177°C)* and continue baking for another 15-17 minutes. The total time these muffins should be in the oven is around 20-22 minutes. Allow to cool for at least 10 minutes in the pan before serving.
Cover leftover muffins tightly and store at room temperature for up to 2 days or in the refrigerator for up to 1 week.
- Prep Time: 15 min
- Cook Time: 20-22 min
- Category: Breakfast
- Method: Baking
- Cuisine: American
How to Make Pumpkin Cream Cheese Muffins Step-by-Step
Baking these Pumpkin Cream Cheese Muffins is easier than you might think, and the process is actually quite fun! I love how each step builds on the last, and before you know it, your kitchen will be filled with that irresistible pumpkin spice aroma. Let me walk you through it, step by step.
1. Preheat and Prepare
First things first, preheat your oven to 425°F (218°C). I like to spray my 12-count muffin pan with nonstick spray, but you can also line it with cupcake liners if you prefer. This recipe makes about 12 to 14 Pumpkin Cream Cheese Muffins, so if you don’t have two pans, you might need to bake in batches.
2. Make the Crumb Topping
While the oven is warming up, start with the crumb topping. In a small bowl, mix together the brown sugar, cinnamon, and melted butter until everything is combined. Then add the flour and gently mix with a fork until you get crumbly bits—not a paste. This topping is what gives the muffins that perfect sweet crunch, so don’t skip it!
3. Mix the Dry Ingredients for the Muffins
In a large bowl, whisk together the flour, baking powder, baking soda, salt, cinnamon, and pumpkin pie spice. This blend of spices is what gives the Pumpkin Cream Cheese Muffins their warm, cozy flavor.
4. Combine the Wet Ingredients
In a separate medium bowl, whisk the brown sugar, granulated sugar, eggs, pumpkin puree, oil, milk, and vanilla extract until smooth and well combined. This mixture is rich and fragrant, and it’s what makes the muffins so moist and tender.
5. Bring It All Together
Pour the wet ingredients into the dry ingredients and gently stir until just combined. Be careful not to over-mix here—some lumps are okay! Over-mixing can make the Pumpkin Cream Cheese Muffins tough, and we want them soft and fluffy.
6. Prepare the Cream Cheese Filling
Using a handheld or stand mixer, beat the softened cream cheese on medium-high speed until smooth and creamy. Then add the egg yolk, vanilla extract, and sugar, and beat again until everything is well combined. This filling is silky and slightly tangy, the perfect contrast to the sweet pumpkin batter.
7. Assemble the Muffins
Now for the fun part! Spoon about one heaping tablespoon of pumpkin batter into each muffin cup. Then add a spoonful of the cream cheese filling—just shy of a full tablespoon works well. Top with another heaping tablespoon of pumpkin batter, filling the cups almost to the top. Don’t worry if some cream cheese peeks out; it bakes beautifully.
Finally, sprinkle the crumb topping over each muffin and gently press it down. This helps the topping stick during baking and gives you that lovely crunch.
8. Bake to Perfection
Place the muffins in the oven and bake at 425°F (218°C) for 5 minutes. Then, without opening the oven, reduce the temperature to 350°F (177°C) and bake for another 15 to 17 minutes. The total baking time is about 20 to 22 minutes. You’ll know they’re done when a toothpick inserted near the cream cheese filling comes out clean.
9. Cool and Enjoy
Let the muffins cool in the pan for at least 10 minutes before removing. This resting time helps them set and makes them easier to handle. Then, enjoy warm or at room temperature with your favorite cup of coffee or tea.
If you have leftovers, simply cover them tightly and store at room temperature for up to 2 days or in the fridge for up to a week. They also freeze well if you want to save some for later.
If you love baking muffins, you might also enjoy trying my Blueberry Zucchini Muffins — they’re a fresh and healthy twist that’s perfect any time of year. And if you’re looking for something savory to start your day, don’t miss my Easy Breakfast Burritos: The Ultimate Morning Comfort Food. For a decadent dessert to round out your meal, the Dubai Chocolate Cheesecake is an absolute showstopper.
What Makes This Pumpkin Cream Cheese Muffins Special
What really sets these Pumpkin Cream Cheese Muffins apart is that perfect balance of flavors and textures. The pumpkin batter is soft, moist, and warmly spiced, while the cream cheese filling adds a creamy, tangy surprise in every bite. Then, the crumb topping gives just the right amount of sweet crunch.
It’s like having a little pumpkin cheesecake wrapped inside a muffin—comforting, indulgent, and totally satisfying. Honestly, once you try these, you’ll see why they’ve become a favorite in my kitchen and, I’m sure, will be in yours too.
Pumpkin Cream Cheese Muffins Recipe Nutrition Facts
| Nutrient | Amount per Muffin |
|---|---|
| Calories | 280 |
| Total Fat | 15g |
| Saturated Fat | 5g |
| Cholesterol | 55mg |
| Sodium | 210mg |
| Total Carbohydrates | 32g |
| Dietary Fiber | 1.5g |
| Sugars | 18g |
| Protein | 4g |
Pumpkin Cream Cheese Muffins FAQs
Can I use fresh pumpkin instead of canned pumpkin puree?
Absolutely! Fresh pumpkin puree works great, but make sure to cook and puree the pumpkin well before using. It might add a bit more moisture, so you may want to reduce the milk slightly.
Can I substitute the vegetable oil with something else?
Yes! You can use melted coconut oil or even a mild-flavored olive oil. Just keep in mind that coconut oil might add a subtle coconut flavor, which can be delicious but different.
How do I store leftover muffins?
These muffins stay fresh at room temperature for about 2 days if covered tightly. For longer storage, keep them in the fridge for up to a week. You can also freeze them for up to 3 months—just thaw before enjoying.
Conclusion
Baking these Pumpkin Cream Cheese Muffins has quickly become one of my favorite ways to welcome the cozy vibes of fall into my kitchen. They’re simple to make, wonderfully flavorful, and have that perfect mix of moist pumpkin, creamy filling, and crumbly topping that keeps everyone coming back for more.
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